Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0316KEGG: bbt:BBta_p0116 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Bind_0314
PFAM: outer membrane efflux protein; KEGG: xau:Xaut_4826 outer membrane efflux protein.
 
 
 0.948
Bind_0315
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bmu:Bmul_6291 multicopper oxidase type 3.
 
   
 0.934
Bind_2153
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: gdi:GDI1513 putative heavy-metal ion transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.784
Bind_0317
KEGG: gvi:glr3185 hypothetical protein.
 
     0.549
Bind_3377
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: atu:Atu1181 hypothetical protein.
   
  
 0.521
Bind_2679
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: spe:Spro_2413 heavy metal translocating P-type ATPase.
     
 0.497
Bind_1836
KEGG: oan:Oant_3233 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
     
 0.496
Bind_0338
KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor.
  
     0.480
Bind_2246
PFAM: protein of unknown function DUF1328; KEGG: atc:AGR_L_805 hypothetical protein.
  
    0.408
Bind_2315
KEGG: atc:AGR_L_450 hypothetical protein.
  
     0.402
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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