Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0327PFAM: regulatory protein TetR; KEGG: gdi:GDI2783 putative transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
Bind_0326
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI2784 putative dehydrogenase.
 
     0.844
Bind_2949
PFAM: regulatory protein MarR; KEGG: gdi:GDI0347 putative transcriptional regulator, family MarR.
  
     0.586
Bind_0623
KEGG: gdi:GDI1198 putative 2-keto-4-pentenoate hydratase-like.
  
     0.541
Bind_0328
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
       0.512
Bind_3529
KEGG: rle:RL2333 hypothetical protein.
  
     0.506
Bind_0192
KEGG: pnu:Pnuc_0538 hypothetical protein.
  
     0.489
Bind_2614
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bxe:Bxe_A1771 putative nucleoside-diphosphate-sugar epimerase.
  
     0.421
Bind_1125
KEGG: hau:Haur_0109 hypothetical protein.
  
     0.416
Bind_1486
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: sus:Acid_6732 NAD-dependent epimerase/dehydratase.
  
     0.405
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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