Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0338KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor. (278 aa)    
Predicted Functional Partners:
Bind_0341
PFAM: metallophosphoesterase; KEGG: xau:Xaut_0974 metallophosphoesterase.
 
     0.895
Bind_0339
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_0976 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.886
Bind_0340
PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_0975 blue (type 1) copper domain protein.
 
     0.831
Bind_2280
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_2101 activator of HSP90 ATPase 1 family protein.
  
     0.646
Bind_1594
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: mlo:mlr2187 hypothetical protein.
 
     0.643
Bind_1384
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_2101 activator of HSP90 ATPase 1 family protein.
  
     0.637
Bind_1612
TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: rle:pRL110285 putative acid phosphatase.
  
     0.589
Bind_0314
PFAM: outer membrane efflux protein; KEGG: xau:Xaut_4826 outer membrane efflux protein.
  
     0.558
Bind_2018
PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_0509 4-oxalocrotonate tautomerase.
  
     0.518
Bind_0316
KEGG: bbt:BBta_p0116 hypothetical protein.
  
     0.480
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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