STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0340PFAM: blue (type 1) copper domain protein; KEGG: xau:Xaut_0975 blue (type 1) copper domain protein. (130 aa)    
Predicted Functional Partners:
Bind_0341
PFAM: metallophosphoesterase; KEGG: xau:Xaut_0974 metallophosphoesterase.
   
 0.974
Bind_0338
KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor.
 
     0.823
Bind_1167
KEGG: nha:Nham_1869 hypothetical protein.
 
 
   0.754
Bind_0339
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_0976 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.543
Bind_0315
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bmu:Bmul_6291 multicopper oxidase type 3.
 
 
 
 0.519
Bind_0061
PFAM: regulatory protein TetR; KEGG: bja:blr7984 transcriptional regulatory protein.
  
     0.473
Bind_2186
PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: mex:Mext_2414 multicopper oxidase type 3.
   
 
 0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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