Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0359PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mex:Mext_1219 cobalamin synthesis protein P47K. (387 aa)    
Predicted Functional Partners:
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.675
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.661
Bind_0180
PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH00971 probable zinc ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.557
Bind_0358
TIGRFAM: acetoin reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ilo:IL0792 acetoin(diacetyl) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.537
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.535
Bind_3513
KEGG: xau:Xaut_3280 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
     
 0.497
rpmB
PFAM: ribosomal protein L28; KEGG: azc:AZC_0547 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.484
Bind_3116
SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein.
 
     0.479
Bind_3507
Cobaltochelatase, CobN subunit; KEGG: bra:BRADO4907 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase.
 
  
 0.470
rpmG
PFAM: ribosomal protein L33; KEGG: mlo:msr0848 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.422
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.