Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0390KEGG: bcs:BCAN_B0384 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Bind_0391
KEGG: rpc:RPC_3632 hypothetical protein.
 
   
 0.960
Bind_0107
PFAM: iron permease FTR1; KEGG: bra:BRADO0319 conserved hypothetical protein; putative high-affinity Fe2+/Pb2+ permease.
 
  
 0.875
Bind_0392
KEGG: bov:BOV_A0332 hypothetical protein.
 
  
 0.872
Bind_2521
PFAM: extracellular solute-binding protein family 1; KEGG: sun:SUN_0958 iron (III) ABC transporter, substrate-binding protein.
   
  
 0.778
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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