Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0400PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bra:BRADO5416 conserved hypothetical protein (superfamily of ARM repeat); LRV protein Fes4 cluster in N-terminus. (266 aa)    
Predicted Functional Partners:
Bind_0399
KEGG: xau:Xaut_0114 hypothetical protein.
 
     0.949
Bind_0401
PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein.
 
    0.889
Bind_0402
PFAM: NifZ family protein; KEGG: rpd:RPD_1069 hypothetical protein.
 
     0.880
Bind_0409
KEGG: rpe:RPE_4534 hypothetical protein.
 
    0.836
Bind_0398
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3416 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
 
    0.834
Bind_0404
TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein.
 
    0.816
Bind_0480
PFAM: protein of unknown function DUF683; KEGG: bra:BRADO5433 conserved hypothetical protein (DUF683).
  
    0.805
Bind_0396
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB.
 
    0.801
Bind_0405
KEGG: rpc:RPC_4465 hypothetical protein.
 
     0.801
Bind_0411
KEGG: pna:Pnap_2347 hypothetical protein.
 
     0.771
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.