Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0410PFAM: globin; KEGG: bra:BRADO5406 putative hemoglobin protein (truncated hemoglobin). (144 aa)    
Predicted Functional Partners:
Bind_0411
KEGG: pna:Pnap_2347 hypothetical protein.
 
     0.895
Bind_0409
KEGG: rpe:RPE_4534 hypothetical protein.
 
     0.585
Bind_0407
KEGG: azc:AZC_3424 2Fe-2S ferredoxin.
 
     0.545
Bind_1972
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gdi:GDI0493 putative flavohemoprotein; Belongs to the globin family.
     
 0.493
Bind_0408
KEGG: mca:MCA0217 hypothetical protein.
       0.486
Bind_0406
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: xau:Xaut_0120 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
   0.466
Bind_2195
PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein.
  
  
 0.453
Bind_0077
KEGG: xau:Xaut_1175 hypothetical protein.
 
     0.445
Bind_0405
KEGG: rpc:RPC_4465 hypothetical protein.
 
     0.423
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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