Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_0445Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (268 aa)    
Predicted Functional Partners:
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.791
Bind_2174
TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB.
 
     0.786
Bind_0933
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase.
    
   0.775
Bind_1796
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_2428 lipoprotein releasing system, transmembrane protein, LolC/E family.
   
 
 0.744
Bind_2114
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
   
 
 0.744
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
 
 0.727
Bind_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein.
   
 
 0.727
Bind_2175
TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: pla:Plav_0138 double-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily.
 
     0.722
Bind_3428
PFAM: heat shock protein DnaJ domain protein; KEGG: mex:Mext_3231 heat shock protein DnaJ domain protein.
  
   
 0.705
Bind_3383
PFAM: SmpA/OmlA domain protein; KEGG: rpa:RPA2737 hypothetical protein.
  
 
 
 0.670
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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