Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0447PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_2255 glycosyltransferases probably involved in cell wall biogenesis-like. (385 aa)    
Predicted Functional Partners:
Bind_0842
KEGG: ava:Ava_1124 hypothetical protein.
 
     0.734
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
 
  
 0.720
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
  
     0.679
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
 
 
 0.672
Bind_1958
KEGG: scl:sce7776 two-component hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.642
Bind_3640
PFAM: cytochrome c class I; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6161 cytochrome c, class I.
  
     0.627
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.610
Bind_1118
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ret:RHE_PF00140 hypothetical protein.
  
     0.607
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.603
Bind_0899
KEGG: dar:Daro_2929 hypothetical protein.
  
     0.600
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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