Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0448PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; putative SAM-dependent methyltransferase domain. (307 aa)    
Predicted Functional Partners:
Bind_1902
PFAM: protein of unknown function DUF535; KEGG: esa:ESA_02461 hypothetical protein.
  
     0.726
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
 
     0.696
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.689
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.685
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
 
    0.684
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.678
Bind_1589
KEGG: rpe:RPE_2667 hypothetical protein.
  
     0.665
Bind_1845
PFAM: Cephalosporin hydroxylase; KEGG: syw:SYNW0087 hypothetical protein.
 
   
 0.661
Bind_2681
KEGG: lbl:LBL_1518 hypothetical protein.
  
     0.648
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.639
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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