Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0450PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase. (318 aa)    
Predicted Functional Partners:
Bind_3448
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mex:Mext_2751 protein of unknown function DUF882.
  
     0.726
Bind_0451
KEGG: mlo:mlr5650 ceramide glucosyltransferase.
       0.671
Bind_2410
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein.
  
     0.671
Bind_2411
PFAM: conserved hypothetical protein; KEGG: mes:Meso_1416 conserved hypothetical protein 1620.
  
     0.653
Bind_0660
PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.574
Bind_2758
KEGG: sil:SPO0036 hypothetical protein.
  
     0.520
Bind_0453
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0302 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.490
Bind_0604
PFAM: alpha-2-macroglobulin domain protein; N/apple PAN domain protein; alpha-2-macroglobulin domain protein 2; KEGG: sme:SMb21298 conserved hypothetical protein, possibly exported.
  
     0.486
Bind_0449
PFAM: fatty acid hydroxylase; KEGG: osa:4352850 Os12g0628400.
       0.465
Bind_0141
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mex:Mext_2752 peptidoglycan-binding domain 1 protein.
  
     0.458
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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