Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0482PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ. (215 aa)    
Predicted Functional Partners:
Bind_0481
TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin.
 
  
 0.961
Bind_0097
PFAM: aminotransferase class V; KEGG: bja:blr4338 cysteine desulfurase.
  
 0.944
Bind_0403
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA0212 cysteine desulfurase.
  
 0.944
Bind_0478
TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX.
 
  
 0.941
Bind_0479
TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: rpc:RPC_4457 protein of unknown function DUF269.
 
    0.930
Bind_0477
KEGG: mca:MCA0234 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.920
Bind_0476
KEGG: xau:Xaut_0091 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.888
Bind_3149
PFAM: ferredoxin; KEGG: mca:MCA0232 ferredoxin, 2Fe-2S.
 
 0.886
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.882
Bind_0474
KEGG: azc:AZC_1040 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1.
 
  
 0.875
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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