STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0484PFAM: nitrogen-fixing NifU domain protein; KEGG: rpb:RPB_0980 nitrogen-fixing NifU-like protein. (106 aa)    
Predicted Functional Partners:
Bind_0483
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_1083 HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
 
 0.862
Bind_0482
PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ.
 
 
 0.755
Bind_2747
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: atc:AGR_C_4790 succinate dehydrogenase iron-sulfur protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.704
Bind_0485
TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: rpa:RPA4607 putative homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
   
 0.653
Bind_0481
TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1034 ferredoxin.
  
  
 0.597
Bind_3149
PFAM: ferredoxin; KEGG: mca:MCA0232 ferredoxin, 2Fe-2S.
 
  
 0.576
Bind_0403
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA0212 cysteine desulfurase.
 
 
 0.558
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.531
Bind_0395
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: gdi:GDI0432 hypothetical protein.
  
    0.530
Bind_0394
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azc:AZC_1043 ferredoxin.
  
  
 0.507
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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