Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0499KEGG: nwi:Nwi_0402 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.732
Bind_0592
KEGG: ana:alr0587 unknown protein.
  
     0.679
Bind_2400
Periplasmic protein-like protein; KEGG: bbt:BBta_5203 hypothetical protein.
  
     0.671
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
  
     0.622
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.592
Bind_3365
PFAM: AsmA family protein; KEGG: rpa:RPA4157 possible AsmA protein, assembly of outer membrane proteins.
  
     0.569
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
  
     0.561
Bind_1329
KEGG: rpb:RPB_4107 hypothetical protein.
  
     0.537
Bind_3430
KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family.
  
     0.521
Bind_1107
KEGG: mex:Mext_4294 hypothetical protein.
  
     0.513
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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