STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0502KEGG: rca:Rcas_3511 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Bind_0842
KEGG: ava:Ava_1124 hypothetical protein.
  
     0.737
Bind_3445
KEGG: swi:Swit_3661 hypothetical protein.
  
     0.659
Bind_0172
KEGG: mex:Mext_3817 hypothetical protein.
  
     0.596
Bind_2015
PFAM: polysaccharide biosynthesis protein; KEGG: ppr:PBPRA2684 hypothetical protein.
  
     0.593
Bind_0500
KEGG: gvi:gll2512 hypothetical protein.
 
     0.589
Bind_0288
PFAM: manganese containing catalase; KEGG: ava:Ava_3821 manganese containing catalase.
  
     0.560
Bind_0501
KEGG: azc:AZC_4001 inner membrane protein.
       0.538
Bind_2216
KEGG: nar:Saro_3404 hypothetical protein.
  
     0.492
Bind_0848
KEGG: bha:BH0727 hypothetical protein.
  
     0.481
Bind_2327
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor.
  
     0.478
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.