Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0503KEGG: fra:Francci3_4500 4Fe-4S ferredoxin, iron-sulfur binding. (386 aa)    
Predicted Functional Partners:
Bind_0505
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: scl:sce4573 hydroxylase or oxidoreductase.
  
 0.995
Bind_0506
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: fra:Francci3_4497 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
   
 0.962
Bind_0507
PFAM: nickel-dependent hydrogenase large subunit; KEGG: ace:Acel_1019 nickel-dependent hydrogenase, large subunit.
 
   
 0.962
Bind_0508
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: fra:Francci3_4495 peptidase M52, hydrogen uptake protein.
 
   
 0.956
Bind_0504
PFAM: cyclic nucleotide-binding; KEGG: ace:Acel_1016 cyclic nucleotide-binding protein.
 
     0.955
Bind_0559
PFAM: protein of unknown function DUF162; KEGG: pde:Pden_2925 iron-sulfur cluster binding protein.
  
 
 0.635
Bind_0558
PFAM: protein of unknown function DUF162; KEGG: pde:Pden_2924 protein of unknown function DUF162.
  
 
 0.538
Bind_0502
KEGG: rca:Rcas_3511 hypothetical protein.
       0.475
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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