Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0504PFAM: cyclic nucleotide-binding; KEGG: ace:Acel_1016 cyclic nucleotide-binding protein. (152 aa)    
Predicted Functional Partners:
Bind_0503
KEGG: fra:Francci3_4500 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.955
Bind_0506
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: fra:Francci3_4497 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
     0.955
Bind_0507
PFAM: nickel-dependent hydrogenase large subunit; KEGG: ace:Acel_1019 nickel-dependent hydrogenase, large subunit.
 
     0.955
Bind_0508
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: fra:Francci3_4495 peptidase M52, hydrogen uptake protein.
 
     0.954
Bind_0505
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: scl:sce4573 hydroxylase or oxidoreductase.
 
     0.952
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.683
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.668
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.662
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.648
Bind_1735
PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase protein.
  
 
 0.637
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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