Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0555PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase. (486 aa)    
Predicted Functional Partners:
Bind_3265
PFAM: protein of unknown function DUF323; KEGG: pla:Plav_2198 protein of unknown function DUF323.
  
   0.625
Bind_1945
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_1639 tetratricopeptide TPR_2.
  
     0.571
Bind_0554
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ppg:PputGB1_0233 taurine dioxygenase.
  
  
 0.539
Bind_1631
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:pRL70183 hypothetical protein.
 
     0.505
Bind_0556
PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0358 major facilitator superfamily MFS_1.
       0.444
Bind_3031
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin).
   
  
 0.441
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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