Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0568PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3926 putative ABC transporter ATP-binding protein in NtrA/RpoN 5'region. (311 aa)    
Predicted Functional Partners:
Bind_0651
PFAM: permease YjgP/YjgQ family protein; KEGG: mex:Mext_3649 permease YjgP/YjgQ family protein.
 
 
 0.985
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
   
 0.981
Bind_0570
PFAM: OstA family protein; KEGG: mex:Mext_2499 OstA family protein.
  
  
 0.958
Bind_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein.
    
0.888
Bind_0569
Hypothetical protein.
       0.773
Bind_0294
PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: mex:Mext_2080 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
 
  
 0.758
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.667
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.658
Bind_0528
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mag:amb3214 biopolymer transport protein.
 
   
 0.630
Bind_3668
PFAM: protein of unknown function DUF140; KEGG: mex:Mext_0891 protein of unknown function DUF140.
 
  
  0.598
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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