Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0571PFAM: protein of unknown function DUF1239; KEGG: bbt:BBta_0124 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Bind_0570
PFAM: OstA family protein; KEGG: mex:Mext_2499 OstA family protein.
 
   
 0.925
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.764
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.715
Bind_2305
KEGG: rpd:RPD_2987 hypothetical protein.
  
     0.660
Bind_0572
PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease.
       0.652
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.635
Bind_3648
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.612
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.611
Bind_1019
KEGG: mex:Mext_1528 hypothetical protein.
  
     0.606
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.603
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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