Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0604PFAM: alpha-2-macroglobulin domain protein; N/apple PAN domain protein; alpha-2-macroglobulin domain protein 2; KEGG: sme:SMb21298 conserved hypothetical protein, possibly exported. (1824 aa)    
Predicted Functional Partners:
Bind_0605
TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: rle:pRL110012 putative penicillin-binding family protein.
 
   
 0.969
Bind_0450
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.486
Bind_0603
KEGG: gox:GOX1434 hypothetical protein.
       0.472
Bind_0644
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein; KEGG: aba:Acid345_4695 nuclease-related protein.
   
    0.468
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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