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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0628Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (529 aa)    
Predicted Functional Partners:
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.772
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
     0.772
Bind_3559
KEGG: mex:Mext_1590 conserved hypothetical protein.
  
     0.769
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.766
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.754
Bind_0356
KEGG: mex:Mext_1764 hypothetical protein.
  
     0.746
Bind_0807
KEGG: mex:Mext_1606 hypothetical protein.
  
     0.738
Bind_1390
PFAM: Invasion associated locus B family protein; KEGG: mmw:Mmwyl1_0483 invasion associated locus B family protein.
  
     0.734
Bind_2294
Porin; PFAM: porin; KEGG: oan:Oant_0133 porin.
  
 
 0.729
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.726
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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