Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0653KEGG: rpa:RPA3064 hypothetical protein. (306 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.876
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.806
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.742
Bind_1711
Hypothetical protein; KEGG: bbt:BBta_1762 putative exported protein of unknown function.
  
     0.729
bamD
DNA uptake lipoprotein-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.724
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
 
   0.719
Bind_0732
KEGG: azc:AZC_4244 hypothetical protein.
  
     0.706
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
 
    0.686
Bind_1390
PFAM: Invasion associated locus B family protein; KEGG: mmw:Mmwyl1_0483 invasion associated locus B family protein.
  
     0.682
Bind_0628
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
    0.656
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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