STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0660PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2; Belongs to the RNase T2 family. (238 aa)    
Predicted Functional Partners:
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
 
     0.839
rlmJ
Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.788
Bind_0450
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.574
Bind_2758
KEGG: sil:SPO0036 hypothetical protein.
  
     0.511
Bind_2192
TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpa:RPA2669 hypothetical protein.
  
     0.497
Bind_3312
PFAM: Extensin family protein; KEGG: azc:AZC_4252 putative uncharacterized protein.
  
     0.468
Bind_1747
KEGG: rpa:RPA3831 hypothetical protein.
  
     0.443
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.426
Bind_1793
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mex:Mext_4069 glycerophosphoryl diester phosphodiesterase.
  
     0.410
Bind_0885
PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: xau:Xaut_4413 protein of unknown function DUF900 hydrolase family protein.
  
     0.406
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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