Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rlmJProtein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. (281 aa)    
Predicted Functional Partners:
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
       0.822
Bind_0660
PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2; Belongs to the RNase T2 family.
       0.813
Bind_0658
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mex:Mext_1044 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
       0.404
Bind_0662
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rpd:RPD_1283 cold-shock protein, DNA-binding.
       0.401
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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