Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0715PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Bind_0716
PFAM: NUDIX hydrolase; KEGG: mex:Mext_4299 NUDIX hydrolase.
       0.798
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.774
Bind_1022
KEGG: azc:AZC_1080 hypothetical protein.
  
     0.774
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.774
Bind_0924
KEGG: mes:Meso_1118 hypothetical protein.
  
     0.773
Bind_3055
PFAM: protein of unknown function DUF459; KEGG: mex:Mext_3271 protein of unknown function DUF459.
  
     0.773
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
  
     0.772
Bind_0731
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.771
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.766
Bind_2927
KEGG: xau:Xaut_2218 hypothetical protein.
  
     0.766
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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