Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_0752PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bbt:BBta_6127 putative extradiol ring-cleavage dioxygenase. (262 aa)    
Predicted Functional Partners:
Bind_0751
KEGG: azc:AZC_2332 DAHP synthetase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II.
       0.569
Bind_1937
PFAM: Pirin domain protein; KEGG: gdi:GDI0848 hypothetical protein; Belongs to the pirin family.
 
  
 0.538
Bind_2116
PFAM: Pirin domain protein; KEGG: cak:Caul_0818 pirin domain protein; Belongs to the pirin family.
 
  
 0.538
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.502
Bind_0623
KEGG: gdi:GDI1198 putative 2-keto-4-pentenoate hydratase-like.
  
  
 0.455
Bind_2830
PFAM: HpcH/HpaI aldolase; KEGG: acr:Acry_2327 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.411
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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