Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0758KEGG: bja:blr1340 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Bind_0757
DedA family; KEGG: rpe:RPE_0755 DedA family.
       0.826
Bind_1661
PFAM: DSBA oxidoreductase; KEGG: bja:bll4294 outer membrane protein.
 
 
 0.791
Bind_0746
PFAM: DSBA oxidoreductase; KEGG: mex:Mext_3177 DsbA oxidoreductase.
 
 
 0.755
Bind_3111
PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44.
  
     0.715
Bind_0093
PFAM: protein of unknown function DUF1013; KEGG: azc:AZC_1470 hypothetical protein.
  
     0.698
Bind_1952
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: nwi:Nwi_1760 NADH-ubiquinone oxidoreductase.
 
     0.683
Bind_1550
PFAM: ETC complex I subunit conserved region; KEGG: mex:Mext_3134 ETC complex I subunit conserved region.
  
     0.587
Bind_1019
KEGG: mex:Mext_1528 hypothetical protein.
  
     0.564
Bind_0827
KEGG: bja:bll0464 hypothetical protein.
  
     0.526
Bind_0510
PFAM: protein of unknown function DUF1058; KEGG: azc:AZC_0237 hypothetical protein.
  
     0.517
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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