Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0768TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: reu:Reut_C5986 NAD(P)H dehydrogenase (quinone):flavodoxin/nitric oxide synthase; Belongs to the WrbA family. (208 aa)    
Predicted Functional Partners:
Bind_1932
TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: gdi:GDI1484 flavoprotein.
  
  
 
0.915
Bind_1407
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll7814 quinone reductase.
    
 0.913
Bind_1828
PFAM: NmrA family protein; KEGG: mlo:mlr1895 hypothetical protein.
     
  0.900
Bind_1893
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: scl:sce1557 hypothetical protein.
     
  0.900
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Bind_0140
PFAM: Ferritin Dps family protein; KEGG: gdi:GDI0826 ferritin-like protein; Belongs to the Dps family.
  
  
 0.565
Bind_1910
PFAM: Peptidoglycan-binding LysM; KEGG: bbt:BBta_3954 hypothetical protein.
   
  
 0.495
Bind_2709
PFAM: Sporulation domain protein; KEGG: mex:Mext_3397 sporulation domain protein.
   
    0.495
Bind_0767
Succinate CoA transferase; KEGG: rru:Rru_A1927 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.
  
    0.465
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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