Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0801KEGG: gur:Gura_3491 GTPase or GTP-binding protein-like protein. (288 aa)    
Predicted Functional Partners:
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
 0.761
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.706
Bind_0800
KEGG: rpe:RPE_2366 hypothetical protein.
       0.701
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.662
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.651
Bind_1845
PFAM: Cephalosporin hydroxylase; KEGG: syw:SYNW0087 hypothetical protein.
  
     0.624
Bind_3116
SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein.
   
 0.605
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.593
Bind_0864
KEGG: bur:Bcep18194_C6733 hypothetical protein.
  
     0.587
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.575
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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