STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0804KEGG: gdi:GDI3845 hypothetical protein. (92 aa)    
Predicted Functional Partners:
Bind_0803
PFAM: Aldose 1-epimerase; KEGG: mex:Mext_2623 aldose 1-epimerase.
  
    0.623
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.521
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.514
Bind_0240
PFAM: CsbD family protein; KEGG: bra:BRADO1086 conserved hypothetical protein, hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
    0.475
Bind_2288
PFAM: CsbD family protein; KEGG: rpa:RPA4217 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.475
Bind_0802
PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rpa:RPA0951 nucleoside 2-deoxyribosyltransferase.
       0.448
Bind_1246
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: prw:PsycPRwf_0720 transcriptional regulator, AraC family.
  
    0.414
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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