STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0806PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase. (507 aa)    
Predicted Functional Partners:
Bind_0835
PFAM: polysaccharide export protein; KEGG: har:HEAR0714 putative polysaccharide export protein.
 
 
 0.959
Bind_1033
PFAM: polysaccharide export protein; KEGG: bra:BRADO2217 putative capsule polysaccharide export outer membrane protein precursor.
 
 
 0.958
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
 
     0.767
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.764
Bind_0842
KEGG: ava:Ava_1124 hypothetical protein.
 
   
 0.763
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.763
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.760
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.757
Bind_1390
PFAM: Invasion associated locus B family protein; KEGG: mmw:Mmwyl1_0483 invasion associated locus B family protein.
  
     0.752
Bind_2723
KEGG: xau:Xaut_3172 hypothetical protein.
  
     0.750
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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