Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0827KEGG: bja:bll0464 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Bind_3667
PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator.
  
     0.702
Bind_2072
PFAM: protein of unknown function DUF1674; KEGG: xau:Xaut_1806 protein of unknown function DUF1674.
  
     0.681
Bind_2192
TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpa:RPA2669 hypothetical protein.
 
     0.674
Bind_3123
PFAM: protein of unknown function DUF1476; KEGG: pla:Plav_2590 protein of unknown function DUF1476.
  
     0.668
Bind_3038
PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153.
  
     0.657
Bind_0074
PFAM: helicase domain protein; KEGG: mex:Mext_4394 helicase domain protein.
  
     0.645
Bind_1037
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2'-deoxycytidine 5'-triphosphate deaminase.
  
     0.640
Bind_3483
PFAM: protein of unknown function DUF1223; KEGG: bbt:BBta_0383 putative exported protein of unknown function.
 
     0.610
Bind_0917
KEGG: xau:Xaut_1414 hypothetical protein.
  
     0.589
Bind_3041
PFAM: NLP/P60 protein; KEGG: mex:Mext_0858 NLP/P60 protein.
  
     0.570
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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