Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0829PFAM: protein of unknown function DUF214; KEGG: bja:blr0461 probable ABC transporter permease protein. (871 aa)    
Predicted Functional Partners:
Bind_0830
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_0285 ABC transporter related.
 
 
 
 0.970
Bind_0831
PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_3994 lipolytic protein G-D-S-L family.
 
 
   0.960
Bind_2888
KEGG: ckl:CKL_2871 hypothetical protein.
  
  
 0.686
Bind_0828
PFAM: protein of unknown function UPF0005; KEGG: azc:AZC_0959 hypothetical protein; Belongs to the BI1 family.
       0.555
Bind_0832
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.524
Bind_2189
PFAM: lipolytic protein G-D-S-L family; KEGG: mex:Mext_0988 hypothetical protein.
 
 
   0.455
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.431
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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