Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0880KEGG: azc:AZC_2357 hypothetical protein. (191 aa)    
Predicted Functional Partners:
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.826
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.765
Bind_1633
KEGG: mex:Mext_0926 hypothetical protein.
  
     0.762
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.759
Bind_2544
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.758
Bind_1873
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.755
Bind_0628
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.754
Bind_3362
PFAM: protein of unknown function DUF423; KEGG: mlo:mll8379 hypothetical protein.
  
     0.753
Bind_0356
KEGG: mex:Mext_1764 hypothetical protein.
  
     0.752
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.751
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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