Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0884PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_1377 peptidoglycan-binding domain 1 protein. (456 aa)    
Predicted Functional Partners:
Bind_3448
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mex:Mext_2751 protein of unknown function DUF882.
 
     0.754
Bind_0542
PFAM: protein of unknown function DUF949; KEGG: mex:Mext_4457 protein of unknown function DUF949.
  
   
 0.517
Bind_2917
PFAM: protein of unknown function DUF949; KEGG: xau:Xaut_0510 protein of unknown function DUF949.
  
   
 0.506
Bind_3505
KEGG: mex:Mext_0674 conserved hypothetical protein; putative deoxyribonuclease.
  
     0.401
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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