Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0900PFAM: regulatory protein TetR; KEGG: gbe:GbCGDNIH1_1544 transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
Bind_2558
PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator.
  
     0.636
Bind_0901
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gbe:GbCGDNIH1_1542 acriflavin resistance plasma membrane protein.
       0.484
Bind_0187
PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator.
  
     0.472
Bind_1464
PFAM: regulatory protein TetR; KEGG: bbt:BBta_5351 putative transcriptional regulatory protein, TetR family.
  
     0.405
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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