Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0918Hypothetical protein. (77 aa)    
Predicted Functional Partners:
Bind_0919
PFAM: autoinducer synthesis protein; KEGG: bbt:BBta_5196 autoinducer synthesis protein.
       0.779
Bind_0920
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: dsh:Dshi_2852 transcriptional regulator, LuxR family.
       0.561
Bind_0917
KEGG: xau:Xaut_1414 hypothetical protein.
       0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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