Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Bind_0928PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpe:RPE_3166 ornithine decarboxylase. (785 aa)    
Predicted Functional Partners:
Bind_2813
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sen:SACE_3360 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
    
 0.937
Bind_1080
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: azc:AZC_0333 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.916
Bind_2601
PFAM: aminotransferase class-III; KEGG: sus:Acid_1357 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.911
Bind_2814
TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mpt:Mpe_A2115 putative bifunctional arginase/ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.911
Bind_3215
PFAM: aminotransferase class-III; KEGG: rpe:RPE_1819 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.911
Bind_2844
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: azc:AZC_3509 putative methanol dehydrogenase regulator.
   
 
 0.720
Bind_0929
PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0639 GCN5-related N-acetyltransferase.
 
     0.585
Bind_0927
KEGG: rpc:RPC_3143 hypothetical protein.
       0.459
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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