Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_0930PFAM: protein of unknown function DUF1457; KEGG: mex:Mext_2259 protein of unknown function DUF1457. (216 aa)    
Predicted Functional Partners:
Bind_3055
PFAM: protein of unknown function DUF459; KEGG: mex:Mext_3271 protein of unknown function DUF459.
  
     0.677
Bind_3249
PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 protein of unknown function DUF1465.
  
     0.660
Bind_3311
KEGG: sme:SMc02769 hypothetical protein.
  
    0.651
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.650
Bind_0715
PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein.
  
     0.636
Bind_0872
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rpe:RPE_2325 transglutaminase family protein cysteine peptidase, BTLCP.
 
     0.601
Bind_0883
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: mex:Mext_4235 regulatory protein MarR.
  
    0.587
Bind_0924
KEGG: mes:Meso_1118 hypothetical protein.
  
     0.583
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.571
Bind_3161
PFAM: nuclease (SNase domain protein); KEGG: bja:blr0145 hypothetical protein.
  
     0.561
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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