Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_0940PFAM: Rhomboid family protein; KEGG: xau:Xaut_2361 rhomboid family protein. (265 aa)    
Predicted Functional Partners:
Bind_0933
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase.
   
   0.786
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.761
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.662
Bind_3471
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpa:RPA4454 antifreeze protein, type I:5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.611
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.599
Bind_0924
KEGG: mes:Meso_1118 hypothetical protein.
  
     0.597
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
  
     0.592
Bind_0148
KEGG: bbt:BBta_1138 hypothetical protein.
 
     0.589
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.589
Bind_0872
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rpe:RPE_2325 transglutaminase family protein cysteine peptidase, BTLCP.
 
     0.552
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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