Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0943KEGG: mex:Mext_2247 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Bind_0945
KEGG: bmt:BSUIS_B1014 hypothetical protein.
 
     0.595
ribB
Transcriptional regulator, XRE family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
       0.588
Bind_0942
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2516 ABC transporter-related protein.
 
     0.558
Bind_1197
KEGG: bra:BRADO2721 hypothetical protein; putative membrane protein; putative TolA family protein.
  
     0.490
Bind_2746
PFAM: Lytic transglycosylase catalytic; KEGG: sme:SMc01850 hypothetical protein.
  
     0.455
Bind_3673
KEGG: mex:Mext_0714 ceramide glucosyltransferase.
  
     0.454
Bind_2758
KEGG: sil:SPO0036 hypothetical protein.
  
     0.426
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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