Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0946PFAM: histone deacetylase superfamily; KEGG: xau:Xaut_1155 histone deacetylase superfamily. (348 aa)    
Predicted Functional Partners:
Bind_1095
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA0814 hypothetical protein.
   
 0.858
Bind_1553
PFAM: Silent information regulator protein Sir2; KEGG: azc:AZC_1935 silent information regulator protein.
    
 0.844
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
    
 0.834
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
    
 0.828
Bind_3116
SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein.
    
 0.828
Bind_1658
PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: nwi:Nwi_2241 peptidase C15, pyroglutamyl peptidase I.
    
   0.813
Bind_1113
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
  
 
 0.809
Bind_2798
PFAM: peptidase S1 and S6 chymotrypsin/Hap; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term).
   
 0.803
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.797
Bind_0469
PFAM: Rhodanese domain protein; Ankyrin; KEGG: xau:Xaut_0147 rhodanese domain protein.
   
 0.792
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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