Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0965PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA1823 TonB dependent receptor. (773 aa)    
Predicted Functional Partners:
Bind_1268
KEGG: gdi:GDI0705 hypothetical protein.
  
     0.551
Bind_2151
PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC.
  
    0.475
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
 
 
 0.463
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.462
Bind_0529
TIGRFAM: TonB family protein; KEGG: pfo:Pfl_3737 TonB-like.
 
   0.460
Bind_0282
KEGG: rpa:RPA4634 hypothetical protein.
  
     0.454
Bind_0966
UspA; KEGG: rpd:RPD_0348 UspA.
       0.439
Bind_0237
PFAM: PepSY-associated TM helix domain protein; KEGG: nha:Nham_0971 hypothetical protein.
  
  
 0.431
Bind_3256
KEGG: gox:GOX0013 hypothetical protein.
  
     0.431
Bind_1625
KEGG: bra:BRADO6543 conserved hypothetical protein; putative signal peptide.
  
 
   0.424
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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