Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0966UspA; KEGG: rpd:RPD_0348 UspA. (81 aa)    
Predicted Functional Partners:
Bind_3018
PFAM: UspA domain protein; KEGG: mex:Mext_1765 UspA domain protein.
  
     0.765
Bind_2221
KEGG: mlo:mll6593 hypothetical protein.
 
    0.469
Bind_0965
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA1823 TonB dependent receptor.
       0.439
Bind_0773
KEGG: atc:AGR_C_3716 hypothetical protein.
  
     0.408
Bind_0967
Hypothetical protein; KEGG: bra:BRADO6018 conserved hypothetical protein; putative signal peptide.
       0.406
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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