Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0970PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A3477 major facilitator superfamily MFS_1. (395 aa)    
Predicted Functional Partners:
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.515
Bind_0971
PFAM: alpha/beta hydrolase fold; KEGG: bvi:Bcep1808_4587 alpha/beta hydrolase fold.
       0.495
Bind_0969
PFAM: Pyrrolo-quinoline quinone; KEGG: dge:Dgeo_1149 pyrrolo-quinoline quinone.
       0.449
Bind_2302
PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc3069 putative transporter transmembrane protein.
  
     0.441
Bind_1706
PFAM: major facilitator superfamily MFS_1; KEGG: bte:BTH_I1400 major facilitator family transporter.
  
     0.428
Bind_2009
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xau:Xaut_2308 major facilitator superfamily MFS_1.
  
     0.422
Bind_0972
PFAM: MaoC domain protein dehydratase; KEGG: bja:blr0424 similar to monoamine oxidase regulatory protein.
       0.416
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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