STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0976TIGRFAM: urea ABC transporter, urea binding protein; KEGG: azc:AZC_4106 amide-UreA binding protein precursor. (426 aa)    
Predicted Functional Partners:
Bind_0978
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: azc:AZC_4104 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
Bind_0977
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: azc:AZC_4105 putative branched-chain amino acid transport system permease protein.
 
 
 0.996
Bind_0980
KEGG: azc:AZC_4102 putative ABC transporter ATP-binding component; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.993
Bind_0979
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: azc:AZC_4103 ABC transporter ATP-binding protein.
 
  
 0.991
Bind_0975
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azc:AZC_4107 multi-sensor hybrid histidine kinase.
 
   
 0.877
Bind_0982
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: bra:BRADO6891 putative formamidase regulatory protein FmdB.
 
     0.850
Bind_0974
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_4108 two component transcriptional regulator.
 
     0.824
Bind_0981
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase.
 
   
 0.810
Bind_1968
PFAM: response regulator receiver; ANTAR domain protein; KEGG: pat:Patl_2529 response regulator receiver and ANTAR domain protein.
  
 
 0.751
ureB
Urease, gamma subunit; KEGG: azc:AZC_1764 urease beta subunit; TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region; Belongs to the urease beta subunit family.
 
   
 0.583
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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