STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0983KEGG: mfa:Mfla_0157 hypothetical protein. (416 aa)    
Predicted Functional Partners:
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.638
Bind_3661
KEGG: gdi:GDI0639 hypothetical protein.
  
   0.633
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.618
Bind_3316
KEGG: nmu:Nmul_A0298 hypothetical protein.
  
     0.616
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.610
Bind_0118
KEGG: gdi:GDI0639 hypothetical protein.
  
   0.605
Bind_2216
KEGG: nar:Saro_3404 hypothetical protein.
  
    0.593
Bind_1949
KEGG: bbt:BBta_5892 hypothetical protein.
  
    0.588
Bind_1995
KEGG: bra:BRADO5888 hypothetical protein.
  
   0.587
Bind_3256
KEGG: gox:GOX0013 hypothetical protein.
  
   0.586
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.