Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1012KEGG: oan:Oant_3962 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Bind_1254
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: xau:Xaut_2944 protein of unknown function DUF306 MetA and HslJ.
  
     0.661
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.642
purD
Phosphoribosylamine--glycine ligase; KEGG: btr:Btr_0639 hypothetical protein; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.
       0.634
Bind_1010
PFAM: peptidase M16 domain protein; KEGG: bbt:BBta_1712 putative Zn-dependent protease.
       0.548
Bind_2491
PFAM: fatty acid hydroxylase; KEGG: ret:RHE_CH02640 probable desaturase protein.
  
     0.545
Bind_2492
PFAM: regulatory protein LacI; KEGG: sme:SMa2049 putative LacI-family transcription regulator.
  
     0.440
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.439
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
     0.430
Bind_0045
KEGG: atc:AGR_C_1076 hypothetical protein.
  
     0.416
Bind_3213
KEGG: gdi:GDI1670 hypothetical protein.
  
     0.415
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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